Stem-loop rno-mir-874

Accession

MI0006118

Description

Rattus norvegicus rno-mir-874 precursor miRNA

Literature search

11 open access papers mention rno-mir-874
(20 sentences)

Sequence

19471 reads, 48 reads per million, 425 experiments

uuagcccugCGGCCCCACGCACCAGGGUAAgagagacucgcuucCUGCCCUGGCCCGAGGGACCGAcuggcugggc
((((((...(((.(((.((..((((((((.(((........))).))))))))..)).))).)))...))))))..

Structure

--      cug   C   A  CA        A   aga 
  uuagcc   CGG CCC CG  CCAGGGUA gag   c
  ||||||   ||| ||| ||  |||||||| |||    
  ggucgg   GCC GGG GC  GGUCCCGU cuu   u
cg      ucA   A   A  CC        C   cgc 

Annotation confidence High

Genome context

chr17: 7025014-7025089 [+]

Mature rno-miR-874-5p

• Accession: MIMAT0017290
• Description: Rattus norvegicus rno-miR-874-5p mature miRNA
• Sequence: 10 - CGGCCCCACGCACCAGGGUAA - 30
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-874-3p

• Accession: MIMAT0005284
• Description: Rattus norvegicus rno-miR-874-3p mature miRNA
• Sequence: 45 - CUGCCCUGGCCCGAGGGACCGA - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249