Stem-loop rno-mir-878

Accession

MI0006120

Description

Rattus norvegicus rno-mir-878 precursor miRNA

Literature search

1 open access papers mention rno-mir-878
(2 sentences)

Sequence

2703 reads, 137.0 reads per million, 68 experiments

ugcagugcuuUAUCUAGUUGGCUGUCAGUCACgugaaacucaagUGCAUGACACCAUACUGGGUAGAggagggcuca
.((..(.((((((((((((((.(((((..(((.(((...))).)))..)))))))).))))))))))).)..))...

Structure

--u  ag g           -   C     GU   g   a 
   gc  u cuuUAUCUAGU UGG UGUCA  CAC uga  
   ||  | ||||||||||| ||| |||||  ||| ||| a
   cg  a gAGAUGGGUCA ACC ACAGU  GUg acu  
acu  gg g           U   -     AC   a   c 

Annotation confidence High

Genome context

chrX: 151283461-151283537 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-878

Mature rno-miR-878-5p

• Accession: MIMAT0061423
• Description: Rattus norvegicus rno-miR-878-5p mature miRNA
• Sequence: 11 - UAUCUAGUUGGCUGUCAGUCAC - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-878-3p

• Accession: MIMAT0005286
• Description: Rattus norvegicus rno-miR-878-3p mature miRNA
• Sequence: 45 - UGCAUGACACCAUACUGGGUAGA - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249