Stem-loop rno-mir-301b

Accession

MI0006137

Description

Rattus norvegicus rno-mir-301b precursor miRNA

Literature search

12 open access papers mention rno-mir-301b
(27 sentences)

Sequence

3162 reads, 6 reads per million, 300 experiments

gcugcggguGCUCUGACUAGGUUGCACUACUgugcuguggaaagCAGUGCAAUGGUAUUGUCAAAGCaucugggacca
..(.((((((((.((((...((((((((.....(((......)))))))))))......)))).)))))))).)....

Structure

--gc g        C    ---UAG        ACUgu   gu 
    u cggguGCU UGAC      GUUGCACU     gcu  g
    | |||||||| ||||      ||||||||     |||   
    g gucuaCGA ACUG      UAACGUGA     Cga  g
acca g        A    UUAUGG        -----   aa 

Annotation confidence Not enough data

Genome context

chr11: 88129426-88129503 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-301b

Mature rno-miR-301b-5p

• Accession: MIMAT0017300
• Description: Rattus norvegicus rno-miR-301b-5p mature miRNA
• Sequence: 10 - GCUCUGACUAGGUUGCACUACU - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-301b-3p

• Accession: MIMAT0005304
• Description: Rattus norvegicus rno-miR-301b-3p mature miRNA
• Sequence: 45 - CAGUGCAAUGGUAUUGUCAAAGC - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249