Stem-loop rno-mir-375

Accession

MI0006140

Description

Rattus norvegicus rno-mir-375 precursor miRNA

Literature search

37 open access papers mention rno-mir-375
(234 sentences)

Sequence

1930053 reads, 2460 reads per million, 488 experiments

uccggccccGCGACGAGCCCCUCGCACAAACCggaccugagcguUUUGUUCGUUCGGCUCGCGUGAggcaggggc
(((.(((.((((.((((((...((.(((((.((........)).))))).))...)))))))))).))).)))..

Structure

--   g   c    A      CCU  C     C  gac 
  ucc gcc cGCG CGAGCC   CG ACAAA Cg   c
  ||| ||| |||| ||||||   || ||||| ||    
  ggg cgg GUGC GCUCGG   GC UGUUU gc   u
cg   a   A    -      CUU  U     u  gag 

Annotation confidence High

Genome context

chr9: 82161716-82161790 [-]

Mature rno-miR-375-5p

• Accession: MIMAT0017301
• Description: Rattus norvegicus rno-miR-375-5p mature miRNA
• Sequence: 10 - GCGACGAGCCCCUCGCACAAACC - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-375-3p

• Accession: MIMAT0005307
• Description: Rattus norvegicus rno-miR-375-3p mature miRNA
• Sequence: 45 - UUUGUUCGUUCGGCUCGCGUGA - 66
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249