Stem-loop rno-mir-384

Accession

MI0006142

Description

Rattus norvegicus rno-mir-384 precursor miRNA

Literature search

9 open access papers mention rno-mir-384
(27 sentences)

Sequence

187250 reads, 157 reads per million, 407 experiments

aaucaggaauUGUAAACAAUUCCUAGGCAAUGUguauaauguugguaagucAUUCCUAGAAAUUGUUCACAAUgccuguaaca
...((((.(((((.(((((((.(((((.((((..................))))))))).))))))).))))).)))).....

Structure

--aau    a     A       C     C    Uguauaau 
     cagg auUGU AACAAUU CUAGG AAUG        g
     |||| ||||| ||||||| ||||| ||||         
     gucc UAACA UUGUUAA GAUCC UUAc        u
acaau    g     C       A     -    ugaauggu 

Annotation confidence High

Genome context

chrX: 76301763-76301845 [-]

Mature rno-miR-384-5p

• Accession: MIMAT0005309
• Description: Rattus norvegicus rno-miR-384-5p mature miRNA
• Sequence: 11 - UGUAAACAAUUCCUAGGCAAUGU - 33
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-384-3p

• Accession: MIMAT0005310
• Description: Rattus norvegicus rno-miR-384-3p mature miRNA
• Sequence: 52 - AUUCCUAGAAAUUGUUCACAAU - 73
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714