Stem-loop rno-mir-410

Accession

MI0006143

Description

Rattus norvegicus rno-mir-410 precursor miRNA

Literature search

9 open access papers mention rno-mir-410
(104 sentences)

Sequence

675622 reads, 486 reads per million, 473 experiments

acuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaauacc
..(((((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))....

Structure

--ac       g            A  A     - uuu 
    uugagga AGGUUGUCUGUG UG GUUCG c   a
    ||||||| |||||||||||| || ||||| |   u
    aacuuuU UCCGGUAGACAC AU UAAgc g   u
ccau       G            A  A     a uaa 

Annotation confidence High

Genome context

chr6: 133893997-133894072 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-410

Mature rno-miR-410-5p

• Accession: MIMAT0017303
• Description: Rattus norvegicus rno-miR-410-5p mature miRNA
• Sequence: 11 - AGGUUGUCUGUGAUGAGUUCG - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-410-3p

• Accession: MIMAT0005311
• Description: Rattus norvegicus rno-miR-410-3p mature miRNA
• Sequence: 46 - AAUAUAACACAGAUGGCCUGU - 66
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249