Stem-loop rno-mir-434-1

Accession

MI0006147

Description

Rattus norvegicus rno-mir-434-1 precursor miRNA

Literature search

7 open access papers mention rno-mir-434-1
(92 sentences)

Sequence

5024799 reads, 3482 reads per million, 487 experiments

guuugaaccacAGCUCGACUCAUGGUUUGAACCAuugucaaacucguggUUUGAACCAUCACUCGACUCCUgguuugaauc
((((((((((.((.((((...((((((((((((((.((...))..))))))))))))))...))))))..)))))))))).

Structure

-          -c  C    CUC              -u  c 
 guuugaacca  AG UCGA   AUGGUUUGAACCAu  gu  
 ||||||||||  || ||||   ||||||||||||||  || a
 uaaguuuggU  UC AGCU   UACCAAGUUUggug  ca  
c          CC  -    CAC              cu  a 

Annotation confidence Medium

Genome context

chr6: 133715378-133715458 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from rno-mir-434-1

Mature rno-miR-434-5p

• Accession: MIMAT0017307
• Description: Rattus norvegicus rno-miR-434-5p mature miRNA
• Sequence: 12 - AGCUCGACUCAUGGUUUGAACCA - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-434-3p

• Accession: MIMAT0005315
• Description: Rattus norvegicus rno-miR-434-3p mature miRNA
• Sequence: 50 - UUUGAACCAUCACUCGACUCCU - 71
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249