Stem-loop rno-mir-471

Accession

MI0006150

Description

Rattus norvegicus rno-mir-471 precursor miRNA

Literature search

1 open access papers mention rno-mir-471
(1 sentences)

Sequence

2345 reads, 386 reads per million, 53 experiments

agcagugcuuUACGUAGUAUAGUGCUUUUCACauuacacaaaaagUGAAAGGUGCCAUACUAUGUacaggaaggcuua
(((..(.((.((((((((((.(((((((((((............))))))))))).)))))))))).)).)..)))..

Structure

--   ag g  u          A           auuac 
  agc  u cu UACGUAGUAU GUGCUUUUCAC     a
  |||  | || |||||||||| |||||||||||      
  ucg  a ga aUGUAUCAUA CGUGGAAAGUg     c
au   ga g  c          C           aaaaa 

Annotation confidence High

Genome context

chrX: 151272104-151272181 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-471

Mature rno-miR-471-5p

• Accession: MIMAT0005318
• Description: Rattus norvegicus rno-miR-471-5p mature miRNA
• Sequence: 11 - UACGUAGUAUAGUGCUUUUCAC - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-471-3p

• Accession: MIMAT0017310
• Description: Rattus norvegicus rno-miR-471-3p mature miRNA
• Sequence: 46 - UGAAAGGUGCCAUACUAUGU - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249