Stem-loop rno-mir-495

Accession

MI0006152

Description

Rattus norvegicus rno-mir-495 precursor miRNA

Literature search

67 open access papers mention rno-mir-495
(267 sentences)

Sequence

52222 reads, 52.0 reads per million, 344 experiments

uaccugaaaaGAAGUUGCCCAUGUUAUUUUUCGcuuuuauuugugacgAAACAAACAUGGUGCACUUCUUuuucgauauc
...(.((((((((((.(((((((((.(((.((((........)))).)))...))))))).)))))))))))).).....

Structure

--uac u          U  -       --A   U    uuu 
     c gaaaaGAAGU GC CCAUGUU   UUU UCGc   u
     | |||||||||| || |||||||   ||| ||||    
     g uuuUUCUUCA CG GGUACAA   AAg agug   a
cuaua c          -  U       ACA   c    uuu 

Annotation confidence High

Genome context

chr6: 133868288-133868367 [+]

Clustered miRNAs

23 other miRNAs are < 10 kb from rno-mir-495

Mature rno-miR-495-5p

• Accession: MIMAT0052022
• Description: Rattus norvegicus rno-miR-495-5p mature miRNA
• Sequence: 11 - GAAGUUGCCCAUGUUAUUUUUCG - 33
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-495-3p

• Accession: MIMAT0005320
• Description: Rattus norvegicus rno-miR-495-3p mature miRNA
• Sequence: 49 - AAACAAACAUGGUGCACUUCUU - 70
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249