Stem-loop rno-mir-598-1

Accession

MI0006155

Description

Rattus norvegicus rno-mir-598-1 precursor miRNA

Literature search

2 open access papers mention rno-mir-598-1
(4 sentences)

Sequence

70784 reads, 60 reads per million, 429 experiments

gcugaugcugGCGGUGAUGCCGAUGGUGCGAGcugaaaaugggcugcUACGUCAUCGUCGUCAUCGUUAucaucaucau
(.(((((.(((((((((((.(((((((((.((((.......)))))).))..))))).))))))))))).))))).)..

Structure

-- c     c           C     --  -  G    ga 
  g ugaug ugGCGGUGAUG CGAUG  GU GC AGcu  a
  | ||||| ||||||||||| |||||  || || ||||  a
  c acuac AUUGCUACUGC GCUAC  CA cg ucgg  a
ua u     u           U     UG  U  -    gu 

Annotation confidence High

Genome context

chr15: 46893157-46893235 [+]

Mature rno-miR-598-5p

• Accession: MIMAT0005324
• Description: Rattus norvegicus rno-miR-598-5p mature miRNA
• Sequence: 11 - GCGGUGAUGCCGAUGGUGCGAG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-598-3p

• Accession: MIMAT0005325
• Description: Rattus norvegicus rno-miR-598-3p mature miRNA
• Sequence: 48 - UACGUCAUCGUCGUCAUCGUUA - 69
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249