Stem-loop rno-mir-671

Accession

MI0006156

Description

Rattus norvegicus rno-mir-671 precursor miRNA

Literature search

19 open access papers mention rno-mir-671
(30 sentences)

Sequence

32845 reads, 41.0 reads per million, 497 experiments

caggaagaggAGGAAGCCCUGGAGGGGCUGGAGGugauggauguuuuccUCCGGUUCUCAGGGCUCCACCUcuuucgagcc
..((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).....

Structure

---ca        A   A      GA           u  ug 
     ggaagagg GGA GCCCUG  GGGGCUGGAGG ga  g
     |||||||| ||| ||||||  ||||||||||| ||  a
     cuuucUCC CCU CGGGAC  UCUUGGCCUcc uu  u
ccgag        A   -      --           u  ug 

Annotation confidence High

Genome context

chr4: 7108747-7108827 [-]

Mature rno-miR-671-5p

• Accession: MIMAT0061424
• Description: Rattus norvegicus rno-miR-671-5p mature miRNA
• Sequence: 11 - AGGAAGCCCUGGAGGGGCUGGAGG - 34
• Evidence: experimental ; cloned [1]

Mature rno-miR-671-3p

• Accession: MIMAT0005326
• Description: Rattus norvegicus rno-miR-671-3p mature miRNA
• Sequence: 50 - UCCGGUUCUCAGGGCUCCACCU - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414