Stem-loop rno-mir-742

Accession

MI0006161

Description

Rattus norvegicus rno-mir-742 precursor miRNA

Literature search

2 open access papers mention rno-mir-742
(3 sentences)

Sequence

287 reads, 31 reads per million, 26 experiments

ggcagugcuuUACUCACAUGGUUGCUAAUCAcgugaaauguaaguGAAAGCCACCAUGUUGGGUAAAguaaagcuca
(((..(((((((((((((((((.(((..((((...........)))).))).)))))).)))))))))))..)))..

Structure

--   ag           -      U   AA    guga 
  ggc  ugcuuUACUCA CAUGGU GCU  UCAc    a
  |||  ||||||||||| |||||| |||  ||||    a
  ucg  augAAAUGGGU GUACCA CGA  AGug    u
ac   aa           U      C   -A    aaug 

Annotation confidence High

Genome context

chrX: 151260313-151260389 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-742

Mature rno-miR-742-5p

• Accession: MIMAT0017314
• Description: Rattus norvegicus rno-miR-742-5p mature miRNA
• Sequence: 11 - UACUCACAUGGUUGCUAAUCA - 31
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-742-3p

• Accession: MIMAT0005333
• Description: Rattus norvegicus rno-miR-742-3p mature miRNA
• Sequence: 46 - GAAAGCCACCAUGUUGGGUAAA - 67
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249