Stem-loop rno-mir-743a

Accession

MI0006162

Description

Rattus norvegicus rno-mir-743a precursor miRNA

Literature search

2 open access papers mention rno-mir-743a
(9 sentences)

Sequence

4945 reads, 200 reads per million, 75 experiments

ugcagugcugUAUUCAGAUUGGUGCCUGUCAUguuuauaagaauGAAAGACGCCAAACUGGGUAGAguggagcuca
.((..((((.(((((((.((((((.((.((((..........)))).)).)))))).))))))).))))..))...

Structure

--u  ag    g       A      C  G    guuu 
   gc  ugcu UAUUCAG UUGGUG CU UCAU    a
   ||  |||| ||||||| |||||| || ||||     
   cg  gugA AUGGGUC AACCGC GA AGua    u
acu  ag    G       A      A  A    agaa 

Annotation confidence High

Genome context

chrX: 151252828-151252903 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-743a

Mature rno-miR-743a-5p

• Accession: MIMAT0017315
• Description: Rattus norvegicus rno-miR-743a-5p mature miRNA
• Sequence: 11 - UAUUCAGAUUGGUGCCUGUCAU - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-743a-3p

• Accession: MIMAT0005334
• Description: Rattus norvegicus rno-miR-743a-3p mature miRNA
• Sequence: 45 - GAAAGACGCCAAACUGGGUAGA - 66
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249