Stem-loop rno-mir-873

Accession

MI0006166

Description

Rattus norvegicus rno-mir-873 precursor miRNA

Literature search

25 open access papers mention rno-mir-873
(47 sentences)

Sequence

50134 reads, 103.0 reads per million, 222 experiments

gugugcauuUGCAGGAACUUGUGAGUCUCCUauugaaaauggacagGAGACUGACAAGUUCCCGGGAAcacccacaa
(((.(..(((.(.(((((((((.((((((((.((.......)).)))))))).))))))))).).)))..).)))..

Structure

--   u ca   G A         G        a  ga 
  gug g  uuU C GGAACUUGU AGUCUCCU uu  a
  ||| |  ||| | ||||||||| |||||||| ||  a
  cac c  AAG G CCUUGAACA UCAGAGga ag  a
aa   c ac   G C         G        c  gu 

Annotation confidence High

Genome context

chr5: 52481076-52481152 [-]

Mature rno-miR-873-5p

• Accession: MIMAT0005339
• Description: Rattus norvegicus rno-miR-873-5p mature miRNA
• Sequence: 10 - UGCAGGAACUUGUGAGUCUCCU - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-873-3p

• Accession: MIMAT0017318
• Description: Rattus norvegicus rno-miR-873-3p mature miRNA
• Sequence: 47 - GAGACUGACAAGUUCCCGGGAA - 68
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249