Stem-loop rno-mir-92b

Accession

MI0006167

Description

Rattus norvegicus rno-mir-92b precursor miRNA

Literature search

18 open access papers mention rno-mir-92b
(132 sentences)

Sequence

1498061 reads, 1125 reads per million, 483 experiments

ggugggcaggAGGGACGGGACGCGGUGCAGUGUUguucuuuccccugccaaUAUUGCACUCGUCCCGGCCUCCggcccccucg
((.((((.(((((..(((((((.((((((((((((..(........).))))))))))))))))))).))))).))))))...

Structure

---  u    a     GA       C            uu uuu 
   gg gggc ggAGG  CGGGACG GGUGCAGUGUUg  c   c
   || |||| |||||  ||||||| ||||||||||||  |    
   cc cccg CCUCC  GCCCUGC UCACGUUAUaac  g   c
gcu  -    g     -G       -            -c ucc 

Annotation confidence High

Genome context

chr2: 188541034-188541116 [-]

Mature rno-miR-92b-5p

• Accession: MIMAT0017319
• Description: Rattus norvegicus rno-miR-92b-5p mature miRNA
• Sequence: 11 - AGGGACGGGACGCGGUGCAGUGUU - 34
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-92b-3p

• Accession: MIMAT0005340
• Description: Rattus norvegicus rno-miR-92b-3p mature miRNA
• Sequence: 52 - UAUUGCACUCGUCCCGGCCUCC - 73
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714