Stem-loop ppt-MIR477b

Accession

MI0006202

Description

Physcomitrella patens ppt-MIR477b precursor miRNA

Literature search

1 open access papers mention ppt-MIR477b
(10 sentences)

Sequence

41917 reads, 1891.0 reads per million, 10 experiments

auguguuggaacuugggaagcaggugcuugauccucUCCCUCAAAGGCUUCCAACAgcaugagcuaguuuuagugucucaaauauugucuguugaggcuagcuccuguucagaucuGUUAGAAGCCUCUGUGGGAGAggagcaaucagcugcugaguggcaccucugauc
..(((((...((((....(((((.((.(((.(((((((((.((.(((((((.(((((((.(((((((((((((.(.(.........).)..))))))))))))).)).......))))).))))))).)).))))))))).))).)).))))))))))))))........

Structure

------au     gga    ggga     g  c   a         U  A       C     -------  u             -u u uca 
        guguu   acuu    agcag ug uug uccucUCCC CA AGGCUUC AACAg       ca gagcuaguuuuag  g c   a
        |||||   ||||    ||||| || ||| ||||||||| || ||||||| |||||       || |||||||||||||  | |   a
        cacgg   ugag    ucguc ac aac aggAGAGGG GU UCCGAAG UUGuc       gu cucgaucggaguu  c g   u
cuagucuc     ---    ----     g  u   g         U  C       A     uagacuu  c             gu u uua 

Annotation confidence Medium

Genome context

Chr21: 14870936-14871105 [-]

Mature ppt-miR477b-5p

• Accession: MIMAT0005375
• Description: Physcomitrella patens ppt-miR477b-5p mature miRNA
• Sequence: 37 - UCCCUCAAAGGCUUCCAACA - 56
• Evidence: experimental ; 454 [1]

Mature ppt-miR477b-3p

• Accession: MIMAT0053775
• Description: Physcomitrella patens ppt-miR477b-3p mature miRNA
• Sequence: 117 - GUUAGAAGCCUCUGUGGGAGA - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769