Stem-loop mcmv-mir-m108-1

Accession

MI0006262

Description

Mouse cytomegalovirus mcmv-mir-m108-1 precursor miRNA

Sequence

cguUCACGAGCAACCGCCCGAAAUGugggucuuccgccucguuacgcacguguaaguauacggcguacggagcuccguucgUUUCUGACGGUGGCUCGUGUCGag
((..(((((((.((((.(.((((((..((..(((((......(((((.(((((....)))))))))))))))..))...)))))).).)))).))))))).))..

Structure

--  uU       A    C C      -ug  uc     ccucgu     a     a 
  cg  CACGAGC ACCG C GAAAUG   gg  uuccg      uacgc cgugu a
  ||  ||||||| |||| | ||||||   ||  |||||      ||||| |||||  
  GC  GUGCUCG UGGC G CUUUgc   cc  gaggc      augcg gcaua g
ga  -U       G    A U      uug  uc     ------     -     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature mcmv-miR-m108-1-5p

• Accession: MIMAT0005557
• Description: Mouse cytomegalovirus mcmv-miR-m108-1-5p mature miRNA
• Sequence: 4 - UCACGAGCAACCGCCCGAAAUG - 25
• Evidence: experimental ; cloned [1]

Mature mcmv-miR-m108-1-3p

• Accession: MIMAT0005558
• Description: Mouse cytomegalovirus mcmv-miR-m108-1-3p mature miRNA
• Sequence: 82 - UUUCUGACGGUGGCUCGUGUCG - 103
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17942535
   Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation
   "Dolken L, Perot J, Cognat V, Alioua A, John M, Soutschek J, Ruzsics Z, Koszinowski U, Voinnet O, Pfeffer S"
   "J Virol (2007) 81:13771-13782


2. PubMed ID: 17928340
   Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus
   "Buck AH, Santoyo-Lopez J, Robertson KA, Kumar DS, Reczko M, Ghazal P"
   "J Virol (2007) 81:13761-13770