Stem-loop xtr-mir-146b

Accession

MI0006265

Description

Xenopus tropicalis xtr-mir-146b precursor miRNA

Literature search

1 open access papers mention xtr-mir-146b
(3 sentences)

Sequence

116832 reads, 10101.0 reads per million, 4 experiments

ccaauggcagggcccggcucUGAGAACUGAAUUCCAUGGACUguuccacucacagcacccucagUCCACAGUGUUCAGUGCUCCAgucuggcugccacua
....(((((..(((.((((..(((.(((((((.(..(((((((..................)))))))..).))))))).))).)))).))))))))...

Structure

ccaa     gg   c    cU   A       U CA       uuccacuc 
    uggca  gcc ggcu  GAG ACUGAAU C  UGGACUg        a
    |||||  ||| ||||  ||| ||||||| |  |||||||         
    accgu  cgg cugA  CUC UGACUUG G  ACCUgac        c
-auc     --   u    -C   G       U AC       ucccacga 

Annotation confidence High

Genome context

1: 14222816-14222915 [+]

Mature xtr-miR-146b-5p

• Accession: MIMAT0005563
• Description: Xenopus tropicalis xtr-miR-146b-5p mature miRNA
• Sequence: 21 - UGAGAACUGAAUUCCAUGGACU - 42
• Evidence: not_experimental

Mature xtr-miR-146b-3p

• Accession: MIMAT0052179
• Description: Xenopus tropicalis xtr-miR-146b-3p mature miRNA
• Sequence: 65 - UCCACAGUGUUCAGUGCUCCA - 85
• Evidence: not_experimental

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112