miRBase entry: xtr-mir-427-2

Stem-loop xtr-mir-427-2

Accession

MI0006269

Description

Xenopus tropicalis xtr-mir-427-2 precursor miRNA

Literature search

1 open access papers mention xtr-mir-427-2
(1 sentences)

Sequence

agcacccaaaacggggcucucucuuguguaugaauuauggugaGAAAGUGCUUUCUGUUUUGGGCGuugu
(((.(((((((((((((.((.((((.((((.....))))..)))).)).)))..)))))))))).)))..

Structure

--   a          --   u  c    -g    u 
  agc cccaaaacgg  ggc cu ucuu  ugua g
  ||| ||||||||||  ||| || ||||  |||| a
  uuG GGGUUUUGUC  UCG GA AGag  guau a
ug   C          UU   U  A    ug    u

Annotation confidence Not enough data

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Genome context

chr3: 133222427-133222496 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-427-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-427

Accession	MIMAT0005566
Description	Xenopus tropicalis xtr-miR-427 mature miRNA
Sequence	44 - GAAAGUGCUUUCUGUUUUGGGCG - 66
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112