Stem-loop rno-mir-146b

Accession

MI0006342

Description

Rattus norvegicus rno-mir-146b precursor miRNA

Literature search

50 open access papers mention rno-mir-146b
(206 sentences)

Sequence

407917 reads, 419 reads per million, 503 experiments

uggccaccuggcccUGAGAACUGAAUUCCAUAGGCUGUgaacucuagcagaugcCCUAGGGACUCAGUUCUGGUGccuggcugugcua
((((((((.(((((..((((((((.((((.((((((((........))))....)))))))).)))))))))).))).)).)).))))

Structure

    -  -  u   -  UG        A    A    ----    gaa 
uggc ca cc ggc cc  AGAACUGA UUCC UAGG    CUGU   c
|||| || || ||| ||  |||||||| |||| ||||    ||||    
aucg gu gg ccG GG  UCUUGACU AGGG AUCC    gacg   u
    u  c  u   U  --        C    -    cgua    auc 

Annotation confidence High

Genome context

chr1: 266089488-266089575 [+]

Mature rno-miR-146b-5p

• Accession: MIMAT0005595
• Description: Rattus norvegicus rno-miR-146b-5p mature miRNA
• Sequence: 15 - UGAGAACUGAAUUCCAUAGGCUGU - 38
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-146b-3p

• Accession: MIMAT0017334
• Description: Rattus norvegicus rno-miR-146b-3p mature miRNA
• Sequence: 55 - CCUAGGGACUCAGUUCUGGUG - 75
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714