Stem-loop rno-mir-551b

Accession

MI0006343

Description

Rattus norvegicus rno-mir-551b precursor miRNA

Literature search

6 open access papers mention rno-mir-551b
(12 sentences)

Sequence

9722 reads, 54 reads per million, 130 experiments

gugcucuuguggcccauGAAAUCAAGCUUGGGUGAGACCUgguacagaacaggaaGGCGACCCAUACUUGGUUUCAGUggcugcaagaauggcucuau
(.((((((((((((..((((((((((..(((((....((((........))))......)))))..))))))))))..))))))))))...)).)...

Structure

--- u  ---          ca          CU     --GAGA    gua 
   g gc   ucuuguggcc  uGAAAUCAAG  UGGGU      CCUg   c
   | ||   ||||||||||  ||||||||||  |||||      ||||    
   c cg   agaacgucgg  ACUUUGGUUC  ACCCA      ggac   a
uau u  gua          UG          AU     GCGGaa    aag 

Annotation confidence High

Genome context

chr2: 116867647-116867744 [+]

Mature rno-miR-551b-5p

• Accession: MIMAT0017335
• Description: Rattus norvegicus rno-miR-551b-5p mature miRNA
• Sequence: 18 - GAAAUCAAGCUUGGGUGAGACCU - 40
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-551b-3p

• Accession: MIMAT0005596
• Description: Rattus norvegicus rno-miR-551b-3p mature miRNA
• Sequence: 56 - GGCGACCCAUACUUGGUUUCAGU - 78
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714