Stem-loop hsa-mir-548j

Accession

MI0006345

Symbol

HGNC: MIR548J

Description

Homo sapiens hsa-mir-548j precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

45 open access papers mention hsa-mir-548j
(167 sentences)

Sequence

1718 reads, 35 reads per million, 58 experiments

gggcagccagugaauaguuagcuggugcAAAAGUAAUUGCGGUCUUUGGUauuacuuucaguggCAAAAACUGCAUUACUUUUGCaccagccuacuagaacgcugaguucag
((((...(((((..((((..(((((((((((((((((.(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).))))..

Structure

--    agc     -aa    ua                 U     C    G    ac 
  gggc   cagug   uagu  gcuggugcAAAAGUAAU GCGGU UUUG Uauu  u
  ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
  cuug   gucgc   auca  cgaccaCGUUUUCAUUA CGUCA AAAC guga  u
ga    --a     aag    uc                 -     A    g    cu 

Annotation confidence High

Genome context

chr22: 26555212-26555323 [-]

Disease association

hsa-mir-548j is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-548j-5p

• Accession: MIMAT0005875
• Description: Homo sapiens hsa-miR-548j-5p mature miRNA
• Sequence: 29 - AAAAGUAAUUGCGGUCUUUGGU - 50
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-548j-3p

• Accession: MIMAT0026737
• Description: Homo sapiens hsa-miR-548j-3p mature miRNA
• Sequence: 65 - CAAAAACUGCAUUACUUUUGC - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18285502
   Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
   "Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA"
   "Genome Res (2008) 18:610-621


2. PubMed ID: 23226537
   The repertoire and features of human platelet microRNAs
   Plé H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P
   PLoS One (2012) 7:e50746