miRBase entry: bna-MIR824

Stem-loop bna-MIR824


Accession
MI0006440
Description
Brassica napus bna-MIR824 precursor miRNA

Literature search
5 open access papers mention bna-MIR824
(15 sentences)

Sequence

ccucgaguugucuuucaugucUAGACCAUUUGUGAGAAGGGAuuuuuuguuugcaccguucaccccacucucaaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaaaacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaccuguauucucccggcuaccaaaacguuaagaaauaaggugaacaucuccccaaaaccugcauccaauuagaaaggucuaggucacagccauuacuugcuaucucucgauuaagcuauuuuauuucuaucaucaucaucagaucauucaggaguuaaguauaaaauaaaauacauuaaguccauucaugacauuucuggaugcugcauacauaauauuuuguuuuuggacuaugccacacuucggacagacauuuuuccuacgagaugucaaaccucugucuggaguguuagagguauuucaugauagcuaagaacuugaaucuugcacuacuuagcuacacuaguuuacuucauaguaaauaacuuggggaguggggaaggugcuggguuauuagucccuucucaucgauggucuagaugugcgaggugacucucauugagg
((((((((((((((.(((((((((((((((.(((((((((((((........(((((.....((((((((((.....((((((.((((((((........))))......))))..))))))...((((((((((((...(((((....((((.....................((((((..((((.(((((...((((..((..........))...))))...))))).)))).....))))))..(((((((....((((.(((..(((....))).......((((((....)))..))).........................((....)).(((.((((((((........)))).)))).)))......))).))))))))))).))))....)))))))))))))))))..(((((((((((((((((((((((((......)))))))).......))))))))))))....)))))....((.((((((((..................))))))))))...(((((((....)))))))......))))))))))..))))).........))))))))))))).))))))))))))))).)))))))))).....))))

Structure
    -----          u               U             -uuuuguuu     guuca          --------------------------------------------------------------------------------------aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucu            acu     uuag    ------------------------------------------------------------------------------------------------------------------------------uuuuccagcuugauauacguu      ---uu    a     gua    -cc  gcua 
ccuc     gaguugucuu caugucUAGACCAUU GUGAGAAGGGAuu         gcacc     ccccacucuc                                                                                                                                           uuuagaaacaaa   auauu    augc                                                                                                                                                   guuuug     augu uaccu   uucu   cg    c
||||     |||||||||| ||||||||||||||| |||||||||||||         |||||     ||||||||||                                                                                                                                           ||||||||||||   |||||    ||||                                                                                                                                                   ||||||     |||| |||||   ||||   ||     
ggag     cucaguggag guguagaucugguag uacucuucccuga         cgugg     ggggugaggg                                                                                                                                           agguuuuuguuu   uauaa    uacg                                                                                                                                                   caaaac     uaca gugga   aaga   gc    c
    uuacu          c               c             uuauugggu     ---aa          guucaauaaaugauacuucauuugaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagcauccuuuuuacagacaggcuucacaccguauc            ---     uaca    ucguaggucuuuacaguacuuaccugaauuacauaaaauaaaauaugaauugaggacuuacuagacuacuacuacuaucuuuauuuuaucgaauuagcucucuaucguucauuaccgacacuggaucuggaaagauuaaccuacguc      cccuc    a     aua    auu  aaaa 


Annotation confidence Not enough data
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Genome context
EM:AC189548: 18638-19269 [+]

Database links

Mature bna-miR824

Accession MIMAT0005599
Description Brassica napus bna-miR824 mature miRNA
Sequence 22 - UAGACCAUUUGUGAGAAGGGA - 42
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17704216
    MicroRNA-mediated regulation of stomatal development in Arabidopsis
    "Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A"
    "Plant Cell (2007) 19:2417-2429