Stem-loop bna-MIR390a

Accession

MI0006447

Description

Brassica napus bna-MIR390a precursor miRNA

Literature search

7 open access papers mention bna-MIR390a
(9 sentences)

Sequence

auuucaggugauguaguugagaaguagcuguaAAGCUCAGGAGGGAUAGCGCCaugucucaccgguacuauaaaauguuuguauaucuauauuggcgcuauccauccugaguucuauggcuucuucuugcuuuuauccugagau
((((((((......(((.((((((.(((((((.(((((((((.(((((((((((..........((((............))))........))))))))))).))))))))).))))))).))))))))).....))))))))

Structure

        ugaugu   u      u       A         G           ugucucaccg    uauaa 
auuucagg      agu gagaag agcugua AGCUCAGGA GGAUAGCGCCa          guac     a
||||||||      ||| |||||| ||||||| ||||||||| |||||||||||          ||||      
uagagucc      ucg uucuuc ucgguau uugaguccu ccuaucgcggu          uaug     a
        -uauuu   -      u       c         a           --uauaucua    uuugu 

Annotation confidence Not enough data

Genome context

EM:DU830650: 512-655 [-]

Mature bna-miR390a

• Accession: MIMAT0005602
• Description: Brassica napus bna-miR390a mature miRNA
• Sequence: 33 - AAGCUCAGGAGGGAUAGCGCC - 53
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856