miRBase entry: bna-MIR169i

Stem-loop bna-MIR169i


Accession
MI0006465
Description
Brassica napus bna-MIR169i precursor miRNA

Literature search
11 open access papers mention bna-MIR169i
(42 sentences)

Sequence

agagucauguuuagUAGCCAAGGAUGACUUGCCUGCucuuuuucaccuccaugauucaauuuuauguacaguuuuggauuacuaugcuucuaaagaguauaguaauucaaaaucuuguugaaucuuugaggguaacaguuucaggcagucuccuuggcuaucuugacaugcuuu
.(((.((((((.((((((((((((.((((.(((((..........((((...((((((((..........(((((((((((((((((((.....)))))))))))))))))))...))))))))...))))..........))))))))))))))))))).)).))))))))).

Structure
a   u      u  -          U    U     Cucuuuuuca    cau        uuuauguaca                   c 
 gag cauguu ag UAGCCAAGGA GACU GCCUG          ccuc   gauucaau          guuuuggauuacuaugcuu u
 ||| |||||| || |||||||||| |||| |||||          ||||   ||||||||          ||||||||||||||||||| a
 uuc guacag uc aucgguuccu cuga cggac          ggag   cuaaguug          uaaaacuuaaugauaugag a
u   -      u  u          -    -     uuugacaaug    uuu        -------uuc                   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bna-miR169i

Accession MIMAT0005620
Description Brassica napus bna-miR169i mature miRNA
Sequence 15 - UAGCCAAGGAUGACUUGCCUGC - 36
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17659282
    Cloning and characterization of microRNAs from Brassica napus
    "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
    "FEBS Lett (2007) 581:3848-3856