Stem-loop ptr-mir-506

Accession

MI0006622

Description

Pan troglodytes ptr-mir-506 precursor miRNA

Literature search

2 open access papers mention ptr-mir-506
(2 sentences)

Sequence

1433 reads, 118.0 reads per million, 13 experiments

ccauacuauguguagugccuUAUUCAGGAAGGUGUUACUUAAUagauuaauauuuGUAAGGCACCCUUCUGAGUAGAguaaugugcaacaugg
.....(((((((((.(((.((((((((((.(((((..((((.(((((....)))))))))))))).)))))))))).)))...))).))))))

Structure

ccaua      -   --g   c          A     UA    A     u 
     cuaugu gua   ugc uUAUUCAGGA GGUGU  CUUA Uagau a
     |||||| |||   ||| |||||||||| |||||  |||| |||||  
     gguaca cgu   aug GAUGAGUCUU CCACG  GAAU Guuua a
-----      a   gua   A          C     --    -     u 

Annotation confidence High

Genome context

chrX: 146962118-146962210 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptr-mir-506

Mature ptr-miR-506-5p

• Accession: MIMAT0052253
• Description: Pan troglodytes ptr-miR-506-5p mature miRNA
• Sequence: 21 - UAUUCAGGAAGGUGUUACUUAAU - 43
• Evidence: not_experimental

Mature ptr-miR-506-3p

• Accession: MIMAT0005770
• Description: Pan troglodytes ptr-miR-506-3p mature miRNA
• Sequence: 56 - GUAAGGCACCCUUCUGAGUAGA - 77
• Evidence: not_experimental

References

1. PubMed ID: 17416744
   Rapid evolution of an X-linked microRNA cluster in primates
   "Zhang R, Peng Y, Wang W, Su B"
   "Genome Res (2007) 17:612-617