Stem-loop oan-mir-9-1

Accession

MI0006658

Description

Ornithorhynchus anatinus oan-mir-9-1 precursor miRNA

Sequence

3090749 reads, 44661.0 reads per million, 5 experiments

ggggccggaucgcacugagcuggcuuuggUCUUUGGUUAUCUAGCUGUAUGAguguaugugaugucaUAAAGCUAGAGAACCGAAUGUAaaaaccagcuuccgccgucacagccccggcccc
((((((((...((..((((((((.(((....(((((((.(((((((.(((((............))))).))))))).)))))))....))).)))))........)))..)).))))))))

Structure

        auc  ac   --------     c   ggUC       A       G     gugua 
ggggccgg   gc  uga        gcugg uuu    UUUGGUU UCUAGCU UAUGA     u
||||||||   ||  |||        ||||| |||    ||||||| ||||||| |||||      
ccccggcc   cg  acu        cgacc aaa    AAGCCAA AGAUCGA AUacu     g
        --c  ac   gccgccuu     a   AUGU       G       A     guagu 

Annotation confidence High

Genome context

X1: 114595959-114596080 [-]

Mature oan-miR-9-5p

• Accession: MIMAT0006792
• Description: Ornithorhynchus anatinus oan-miR-9-5p mature miRNA
• Sequence: 30 - UCUUUGGUUAUCUAGCUGUAUGA - 52
• Evidence: not_experimental

Mature oan-miR-9-3p

• Accession: MIMAT0006793
• Description: Ornithorhynchus anatinus oan-miR-9-3p mature miRNA
• Sequence: 68 - UAAAGCUAGAGAACCGAAUGUA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004