Stem-loop oan-mir-1329

Accession

MI0006663

Description

Ornithorhynchus anatinus oan-mir-1329 precursor miRNA

Sequence

4836 reads, 99 reads per million, 5 experiments

gaggaaucucaaucugguuguaggggUACAGUGAUCAGGUUACGAUGGauuucucaaguaacaaCCUCGUAGCUCGGUCACGAUAuccauaugacucgaagagcaacaauuuuggucccguuccuc
(((((((.....((.(((((((.(((((..((((((.((((((((.((................)))))))))).))))))..))))).))))))).)).((.(((.....))).))..)))))))

Structure

       ---------------cucaa  u       g     CA      A        U  auuucuc 
gaggaau                    uc gguugua gggUA  GUGAUC GGUUACGA GG       a
|||||||                    || ||||||| |||||  |||||| |||||||| ||        
cuccuug                    ag ucaguau ccuAU  CACUGG UCGAUGCU CC       a
       cccugguuuuaacaacgaga  c       a     AG      C        -  aacaaug 

Annotation confidence Not enough data

Genome context

1: 28887189-28887314 [-]

Mature oan-miR-1329-5p

• Accession: MIMAT0006798
• Description: Ornithorhynchus anatinus oan-miR-1329-5p mature miRNA
• Sequence: 27 - UACAGUGAUCAGGUUACGAUGG - 48
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1329-3p

• Accession: MIMAT0006799
• Description: Ornithorhynchus anatinus oan-miR-1329-3p mature miRNA
• Sequence: 65 - CCUCGUAGCUCGGUCACGAUA - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004