Stem-loop oan-mir-183

Accession

MI0006667

Description

Ornithorhynchus anatinus oan-mir-183 precursor miRNA

Literature search

2 open access papers mention oan-mir-183
(7 sentences)

Sequence

2305 reads, 40.0 reads per million, 5 experiments

ggagggggagacccucacuccuguucugugUAUGGCACUGGUAGAAUUCACUgugaaaacacacuaucagugaauuaccaaagggccauaaacagagcagagaaagaaccacaagacucucccaucucucc
(((((((((((..(((..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).))..)).......)..)))))).)))))..

Structure

--     -      cc -------  ac  -         g      --AC     GA        ug aaa 
  ggagg gggaga  c       uc  uc cuguucugu UAUGGC    UGGUA  AUUCACUg  a   c
  ||||| ||||||  |       ||  || ||||||||| ||||||    |||||  ||||||||  |    
  ucucu cccucu  g       ag  ag gacgagaca auaccg    accau  uaagugac  u   a
cc     a      ca aacacca  aa  a         a      ggaa     --        ua cac 

Annotation confidence Not enough data

Genome context

10: 47132873-47133003 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-183

Mature oan-miR-183-5p

• Accession: MIMAT0006805
• Description: Ornithorhynchus anatinus oan-miR-183-5p mature miRNA
• Sequence: 31 - UAUGGCACUGGUAGAAUUCACU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004