Stem-loop oan-mir-33a

Accession

MI0006674

Description

Ornithorhynchus anatinus oan-mir-33a precursor miRNA

Literature search

1 open access papers mention oan-mir-33a
(1 sentences)

Sequence

3798 reads, 75.0 reads per million, 5 experiments

gccgcagcggcugccgcuguaGUGCAUUGUAGUUGCAUUGCAUgugucugaccagggugCAAUGCCCCUGCAGUGCAAUAcagagccagcccccggc
((((..(.(((((.(.(((((.((((((((((..(((((((((.(.........).)))))))))..)))))))))).))))).).)))))).))))

Structure

    ca c     c g     G          UU         g guc 
gccg  g ggcug c cugua UGCAUUGUAG  GCAUUGCAU u   u
||||  | ||||| | ||||| ||||||||||  ||||||||| |   g
cggc  c ccgac g gacAU ACGUGACGUC  CGUAACgug g   a
    -c -     c a     A          CC         g acc 

Annotation confidence Not enough data

Genome context

2: 34459054-34459150 [+]

Mature oan-miR-33-5p

• Accession: MIMAT0006817
• Description: Ornithorhynchus anatinus oan-miR-33-5p mature miRNA
• Sequence: 22 - GUGCAUUGUAGUUGCAUUGCAU - 43
• Evidence: experimental ; Illumina [1]

Mature oan-miR-33a-3p

• Accession: MIMAT0006818
• Description: Ornithorhynchus anatinus oan-miR-33a-3p mature miRNA
• Sequence: 60 - CAAUGCCCCUGCAGUGCAAUA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004