Stem-loop oan-mir-1a

Accession

MI0006700

Description

Ornithorhynchus anatinus oan-mir-1a precursor miRNA

Sequence

5919208 reads, 109189 reads per million, 5 experiments

gggauguacaccugcucagaguACAUACUUCUUUAUGUACCCAUAugaacauaaaaagcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggcaggcgccgaccc
(((.((..(.((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).)))))).).)).)))

Structure

   a  ua a      c                     AC     ugaaca 
ggg ug  c ccugcu agaguACAUACUUCUUUAUGU  CCAUA      u
||| ||  | |||||| |||||||||||||||||||||  |||||       
ccc gc  g ggacgg uuuUAUGUAUGAAGAAAUGUA  GGUau      a
   a  -c c      u                     -A     cgaaaa 

Annotation confidence Not enough data

Genome context

7: 18283571-18283672 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-1a

Mature oan-miR-1a-3p

• Accession: MIMAT0006863
• Description: Ornithorhynchus anatinus oan-miR-1a-3p mature miRNA
• Sequence: 62 - UGGAAUGUAAAGAAGUAUGUAU - 83
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-1a-5p

• Accession: MIMAT0026752
• Description: Ornithorhynchus anatinus oan-miR-1a-5p mature miRNA
• Sequence: 23 - ACAUACUUCUUUAUGUACCCAUA - 45
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45