Stem-loop oan-mir-133a-1

Accession

MI0006701

Description

Ornithorhynchus anatinus oan-mir-133a-1 precursor miRNA

Sequence

54240 reads, 1258 reads per million, 5 experiments

ggccuucggcaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuucaauggauUUGGUCCCCUUCAACCAGCUGUagcuaugcauugaacacc
.........((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))......

Structure

ggccuucgg      uuu    a       AA  U  A        accuc 
         caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
         ||||||   |||| |||||||  || || ||||||||      
         guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
---ccacaa      uau    G       AC  C  C        guaac 

Annotation confidence High

Genome context

7: 18287487-18287587 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-133a-1

Mature oan-miR-133a-5p

• Accession: MIMAT0006864
• Description: Ornithorhynchus anatinus oan-miR-133a-5p mature miRNA
• Sequence: 24 - AGCUGGUAAAAUGGAACCAAAU - 45
• Evidence: experimental ; Illumina [1]

Mature oan-miR-133a-3p

• Accession: MIMAT0006865
• Description: Ornithorhynchus anatinus oan-miR-133a-3p mature miRNA
• Sequence: 62 - UUGGUCCCCUUCAACCAGCUGU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004