Stem-loop oan-mir-1340

Accession

MI0006704

Description

Ornithorhynchus anatinus oan-mir-1340 precursor miRNA

Sequence

58 reads, 1 reads per million, 3 experiments

guuugcacacaccuauggugucguCUUCCAAUCCAGAGGACAGCCagagagagagaccUGCUGUCCUUUGUAUUAGGAGAuaacaucacgggcaguaaaguugugagc
....((.(((((((.((((((.((((((.(((.(((((((((((.((..........))))))))))))).))).)))))).)))))).))).........)))).))

Structure

guuu  a    ---------   a      c      C   C           C  agag 
    gc caca         ccu uggugu guCUUC AAU CAGAGGACAGC ag    a
    || ||||         ||| |||||| |||||| ||| ||||||||||| ||     
    cg gugu         ggg acuaca uAGAGG UUA GUUUCCUGUCG Uc    g
----  a    ugaaaugac   c      a      A   U           -  caga 

Annotation confidence Not enough data

Genome context

Contig10069: 6877-6984 [+]

Mature oan-miR-1340-5p

• Accession: MIMAT0006868
• Description: Ornithorhynchus anatinus oan-miR-1340-5p mature miRNA
• Sequence: 25 - CUUCCAAUCCAGAGGACAGCC - 45
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1340-3p

• Accession: MIMAT0006869
• Description: Ornithorhynchus anatinus oan-miR-1340-3p mature miRNA
• Sequence: 59 - UGCUGUCCUUUGUAUUAGGAGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004