miRBase entry: oan-mir-1342

Stem-loop oan-mir-1342


Accession
MI0006707
Description
Ornithorhynchus anatinus oan-mir-1342 precursor miRNA


Sequence

20 reads, 3.0 reads per million, 3 experiments
cccacuauuuuuguggAACUGGGAUUGCUUGGCCuacaaugguacuaggccaugcugggcuggcagugccagugaagggaggaggguggg
((((((.(((((.(...(((((.((((((.((((((..(((((.....)))))..)))))))))))).)))))...).))))).))))))

Structure
      a     g ggA     G      U      ca     a 
cccacu uuuuu u   ACUGG AUUGCU GGCCua  auggu c
|||||| ||||| |   ||||| |||||| ||||||  ||||| u
gggugg aggag g   ugacc ugacgg ucgggu  uaccg a
      g     g aag     g      -      cg     g 


Annotation confidence Not enough data
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Genome context
X3: 33528421-33528510 [+]

Database links

Mature oan-miR-1342-5p

Accession MIMAT0006873
Description Ornithorhynchus anatinus oan-miR-1342-5p mature miRNA
Sequence 17 - AACUGGGAUUGCUUGGCC - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004