Stem-loop oan-mir-1343

Accession

MI0006708

Description

Ornithorhynchus anatinus oan-mir-1343 precursor miRNA

Sequence

7 reads, 0 reads per million, 3 experiments

gccgggGAGGGGACCGACCCCCAGUCGCccggagccgagaaacgGGGCUGGGAGACGAUCCCUccccggc
((((((((((((..((.(.((((((..((((...........)))))))))).).)).))))))))))))

Structure

            AC  A C      CG    gagc 
gccgggGAGGGG  CG C CCCAGU  Cccg    c
||||||||||||  || | ||||||  ||||    g
cggccccUCCCU  GC G GGGUCG  GGgc    a
            -A  A A      --    aaag 

Annotation confidence Low

Genome context

Contig1085: 185766-185835 [-]

Mature oan-miR-1343-5p

• Accession: MIMAT0006874
• Description: Ornithorhynchus anatinus oan-miR-1343-5p mature miRNA
• Sequence: 7 - GAGGGGACCGACCCCCAGUCGC - 28
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1343-3p

• Accession: MIMAT0006875
• Description: Ornithorhynchus anatinus oan-miR-1343-3p mature miRNA
• Sequence: 45 - GGGCUGGGAGACGAUCCCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004