Stem-loop oan-mir-196a

Accession

MI0006709

Description

Ornithorhynchus anatinus oan-mir-196a precursor miRNA

Sequence

10240 reads, 351 reads per million, 3 experiments

gcccgccucgcucagcuggucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaauuuugaacUCGGCAACAAGAAACUGUCUGAguuacaucagucgguuuucgucgugggc
((((((..((...((((((..((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))....))))))..))..))))))

Structure

      cu  cuc      --uc                  A          a  gaa 
gcccgc  cg   agcugg    uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
||||||  ||   ||||||    |||||||||||||||||| |||||||||| ||    
cgggug  gc   uuggcu    acauugAGUCUGUCAAAG ACAACGGCUc aa   u
      cu  -uu      gacu                  A          -  guu 

Annotation confidence High

Genome context

Contig109061: 759-872 [-]

Mature oan-miR-196a-5p

• Accession: MIMAT0006876
• Description: Ornithorhynchus anatinus oan-miR-196a-5p mature miRNA
• Sequence: 29 - UAGGUAGUUUCAUGUUGUUGGG - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-196a-3p

• Accession: MIMAT0006877
• Description: Ornithorhynchus anatinus oan-miR-196a-3p mature miRNA
• Sequence: 65 - UCGGCAACAAGAAACUGUCUGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004