Stem-loop oan-mir-1422b-1

Accession

MI0006714

Description

Ornithorhynchus anatinus oan-mir-1422b-1 precursor miRNA

Sequence

1825 reads, 1779.0 reads per million, 2 experiments

gaccucgcccagauuggagugagcaucgugauucuuguuuCAAUCCAUACAAGUAUUUUCUAUAUguacagaugauguAGAAAAUCUUGUGUGGAUUGAUaccagggucauauauacucagagguc
((((((..(((...)))..((((....((((((((.((.((((((((((((((.(((((((((((.........))))))))))))))))))))))))).)).)))))))).....))))))))))

Structure

      gcccagauuggag    -cauc        u  u              U           gua 
gaccuc             ugag     gugauucu gu uCAAUCCAUACAAG AUUUUCUAUAU   c
||||||             ||||     |||||||| || |||||||||||||| |||||||||||   a
cuggag             acuc     uacuggga ca AGUUAGGUGUGUUC UAAAAGAugua   g
      -------------    auaua        c  U              -           gua 

Annotation confidence Medium

Genome context

X1: 94739005-94739130 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from oan-mir-1422b-1

Mature oan-miR-1422b-1-5p

• Accession: MIMAT0006885
• Description: Ornithorhynchus anatinus oan-miR-1422b-1-5p mature miRNA
• Sequence: 41 - CAAUCCAUACAAGUAUUUUCUAUAU - 65
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1422b-3p

• Accession: MIMAT0006886
• Description: Ornithorhynchus anatinus oan-miR-1422b-3p mature miRNA
• Sequence: 79 - AGAAAAUCUUGUGUGGAUUGAU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004