Stem-loop oan-mir-1422f

Accession

MI0006715

Description

Ornithorhynchus anatinus oan-mir-1422f precursor miRNA

Sequence

2271 reads, 1345 reads per million, 3 experiments

uuggagggaucaugaugguucugguuUAAGUCAUGACAAGUUUUUCUugcaguagagauaaucuggAAAAAAUGGUCAUGACUGAUaccaagaucauauuacguacccagaguccaucaucucuuuucag
.((((((((..(((((((((((((....(((((((((...(((((((......(((.....))))))))))...)))))))))(((......)))...........)))))).))))))).)))))))).

Structure

u        uc       -      -------------------uuUA         AAG       ugcagu   g 
 uggaggga  augaugg uucugg                       AGUCAUGAC   UUUUUCU      aga a
 ||||||||  ||||||| ||||||                       |||||||||   |||||||      ||| u
 acuuuucu  uacuacc gagacc                       UCAGUACUG   AAAAAgg      ucu a
g        -c       u      caugcauuauacuagaaccaUAG         GUA       ------   a 

Annotation confidence High

Genome context

Contig11344: 5841-5970 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from oan-mir-1422f

Mature oan-miR-1422f-5p

• Accession: MIMAT0006887
• Description: Ornithorhynchus anatinus oan-miR-1422f-5p mature miRNA
• Sequence: 27 - UAAGUCAUGACAAGUUUUUCU - 47
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1422f-3p

• Accession: MIMAT0006888
• Description: Ornithorhynchus anatinus oan-miR-1422f-3p mature miRNA
• Sequence: 67 - AAAAAAUGGUCAUGACUGAU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004