Stem-loop oan-mir-1422k

Accession

MI0006719

Description

Ornithorhynchus anatinus oan-mir-1422k precursor miRNA

Sequence

4399 reads, 1957 reads per million, 4 experiments

gugaucauugugaugcugguuuAAGUCCAGACAAGUGUUUUCUguauauuuagauaauguAGAAAACCUUAUCUGGAUUUGUaccagcaucagauuau
((((((....((((((((((.((((((((((.(((.(((((((((((.........)))))))))))))).)))))))))).))))))))))))))))

Structure

      auug          u          C   U           auu 
gugauc    ugaugcuggu uAAGUCCAGA AAG GUUUUCUguau   u
||||||    |||||||||| |||||||||| ||| |||||||||||   a
uauuag    acuacgacca GUUUAGGUCU UUC CAAAAGAugua   g
      ----          U          A   -           aua 

Annotation confidence High

Comments

The 5' mature product seems to be predominantly expressed in platypus, with the 3' product more prevalent in echidna [1].

Genome context

Contig11344: 14337-14434 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from oan-mir-1422k

Mature oan-miR-1422k-5p

• Accession: MIMAT0006895
• Description: Ornithorhynchus anatinus oan-miR-1422k-5p mature miRNA
• Sequence: 23 - AAGUCCAGACAAGUGUUUUCU - 43
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1422k-3p

• Accession: MIMAT0006896
• Description: Ornithorhynchus anatinus oan-miR-1422k-3p mature miRNA
• Sequence: 61 - AGAAAACCUUAUCUGGAUUUGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004