Stem-loop oan-mir-139

Accession

MI0006724

Description

Ornithorhynchus anatinus oan-mir-139 precursor miRNA

Gene family

MIPF0000117; mir-139

Sequence

14262 reads, 345 reads per million, 5 experiments

ggggcccggguguagUCUACAGUGCAUGUGUCUCCAGggacacuagacagcUGGAGACACAGCUCUGUUGGAUacaaccgaagccac
..(((.(((.((((.(((((((.((.(((((((((((.............))))))))))))).))).)))))))).)))..)))..

Structure

gg   -c   g    g    -   U  A           ggaca 
  ggc  cgg ugua UCUA CAG GC UGUGUCUCCAG     c
  |||  ||| |||| |||| ||| || |||||||||||     u
  ccg  gcc acaU AGGU GUC CG ACACAGAGGUc     a
ca   aa   a    -    U   U  -           gacag 

Annotation confidence High

Genome context

Contig13261: 5446-5532 [-]

Mature oan-miR-139-5p

• Accession: MIMAT0006904
• Description: Ornithorhynchus anatinus oan-miR-139-5p mature miRNA
• Sequence: 16 - UCUACAGUGCAUGUGUCUCCAG - 37
• Evidence: experimental ; Illumina [1]

Mature oan-miR-139-3p

• Accession: MIMAT0006905
• Description: Ornithorhynchus anatinus oan-miR-139-3p mature miRNA
• Sequence: 52 - UGGAGACACAGCUCUGUUGGAU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004