Stem-loop oan-mir-30c-2

Accession

MI0006728

Description

Ornithorhynchus anatinus oan-mir-30c-2 precursor miRNA

Sequence

111128 reads, 2259 reads per million, 5 experiments

cuguucuaaagagcccugagugacagguacUGUAAACAUCCUACACUCUCAGCuguagaugugagaaagCUGGGAGAAGGCUGUUUACUCUcucugccuuggaaaucagccaaagagaacag
(((((((........((((.(..((((((..(((((((.(((...(((((((((.............))))))))).))).)))))))......)))).))..).))))......)))))))

Structure

       aaagagcc    g ga  -    ----cU       U   ACA         guaga 
cuguucu        cuga u  ca ggua      GUAAACA CCU   CUCUCAGCu     u
|||||||        |||| |  || ||||      ||||||| |||   |||||||||     g
gacaaga        gacu a  gu ccgu      CAUUUGU GGA   GAGGGUCga     u
       --gaaacc    a ag  u    cucUCU       C   --A         aagag 

Annotation confidence High

Genome context

Contig1501: 64364-64485 [-]

Mature oan-miR-30c-5p

• Accession: MIMAT0006911
• Description: Ornithorhynchus anatinus oan-miR-30c-5p mature miRNA
• Sequence: 31 - UGUAAACAUCCUACACUCUCAGC - 53
• Evidence: experimental ; Illumina [1]

Mature oan-miR-30c-2-3p

• Accession: MIMAT0006912
• Description: Ornithorhynchus anatinus oan-miR-30c-2-3p mature miRNA
• Sequence: 70 - CUGGGAGAAGGCUGUUUACUCU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004