miRBase entry: oan-mir-92b-1

Stem-loop oan-mir-92b-1


Accession
MI0006732
Description
Ornithorhynchus anatinus oan-mir-92b-1 precursor miRNA


Sequence

48 reads, 2.0 reads per million, 5 experiments
ucaaaagccaggaaaagucaaaccccuuucuaugcagguugggaucaguggaaaugcuguuugccuuuggUAUUGCACUUGUCCCAGCCUGUugagauuacugaagauuguggcuga
.....(((((.((....(((........(((..((((((((((((.((((..(((((((........))))))).)))).))))))))))))..)))....)))...)).)))))..

Structure
ucaaa     g  aaag   aaccccuu   au            c    ga       uuu 
     agcca ga    uca        ucu  gcagguugggau agug  aaugcug   g
     ||||| ||    |||        |||  |||||||||||| ||||  |||||||    
     ucggu uu    agu        aga  UGUCCGACCCUG UCAC  UUAUggu   c
---ag     g  -aga   ----cauu   gu            U    -G       uuc 


Annotation confidence Not enough data
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Genome context
1: 18870001-18870117 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-92b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-92b-1-3p

Accession MIMAT0006918
Description Ornithorhynchus anatinus oan-miR-92b-1-3p mature miRNA
Sequence 71 - UAUUGCACUUGUCCCAGCCUGU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004