Stem-loop oan-mir-1420a

Accession

MI0006735

Description

Ornithorhynchus anatinus oan-mir-1420a precursor miRNA

Sequence

45 reads, 18 reads per million, 4 experiments

gcaucauuccccaucuuugucaAUUCGAUCAGCCUGCACUCUcugguugugucagaaggAAAGUGCUUCCUGUUCGGAUAAacaggcuggggugcggc
(((.....(((((.(((.((..((((((.(((...(((((.(((..(((...)))..))).)))))...))).))))))..))))).))))))))...

Structure

---   ucauu     u   u  ca      U   CCU     C   gg   u 
   gca     cccca cuu gu  AUUCGA CAG   GCACU Ucu  uug  
   |||     ||||| ||| ||  |||||| |||   ||||| |||  ||| g
   cgu     ggggu gga ca  UAGGCU GUC   CGUGA Agg  gac  
cgg   -----     c   -  AA      U   CUU     A   aa   u 

Annotation confidence Not enough data

Genome context

Contig1754: 86316-86413 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-1420a

Mature oan-miR-1420a-5p

• Accession: MIMAT0006922
• Description: Ornithorhynchus anatinus oan-miR-1420a-5p mature miRNA
• Sequence: 23 - AUUCGAUCAGCCUGCACUCU - 42
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1420a-3p

• Accession: MIMAT0006923
• Description: Ornithorhynchus anatinus oan-miR-1420a-3p mature miRNA
• Sequence: 60 - AAAGUGCUUCCUGUUCGGAUAA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004