Stem-loop oan-mir-1420d

Accession

MI0006738

Description

Ornithorhynchus anatinus oan-mir-1420d precursor miRNA

Sequence

31 reads, 27 reads per million, 2 experiments

uuauacugcuagugauuauucaacucugccuAUCUGGCCUGGUUGCACUCUCUgaggauauaaaaaucagAAAUUGCUACCAGGUUGGAUGUgcuugguugggucuuggcuucuaa
.......(((((.(((...((((((..((.(((((((((((((.(((...(((((...........)))))...))).))))))))))))).))..))))))))))))))......

Structure

uuauacu     u   uau      cu  c             U   CUC     ggau 
       gcuag gau   ucaacu  gc uAUCUGGCCUGGU GCA   UCUga    a
       ||||| |||   ||||||  || ||||||||||||| |||   |||||    u
       cgguu cug   gguugg  cg GUAGGUUGGACCA CGU   Agacu    a
-aaucuu     -   ---      uu  U             U   UAA     aaaa 

Annotation confidence Not enough data

Genome context

Contig1754: 88499-88614 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-1420d

Mature oan-miR-1420d-5p

• Accession: MIMAT0006927
• Description: Ornithorhynchus anatinus oan-miR-1420d-5p mature miRNA
• Sequence: 32 - AUCUGGCCUGGUUGCACUCUCU - 53
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1420d-3p

• Accession: MIMAT0006928
• Description: Ornithorhynchus anatinus oan-miR-1420d-3p mature miRNA
• Sequence: 71 - AAAUUGCUACCAGGUUGGAUGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004