Stem-loop oan-mir-1348

Accession

MI0006742

Description

Ornithorhynchus anatinus oan-mir-1348 precursor miRNA

Sequence

132 reads, 10 reads per million, 5 experiments

gaacccaggucuuugugaugucuccuuggaggauuaagaaagucgagucauugcaguccagcagguucgacugauacgcuccuccuacaugaaaAAGGUAGAGGAACAGGCCCUGggugcc
..(((((((.(((.((..(.(((((((((((((.......(((((((.(.((((......)))))))))))).......)))))).........)))).))).).))))).)))))))...

Structure

-ga       u   u  ga g   -    ---------      uuaagaa       u a    ag 
   acccagg cuu gu  u ucu ccuu         ggagga       agucgag c uugc  u
   ||||||| ||| ||  | ||| ||||         ||||||       ||||||| | ||||   
   uggGUCC GGA CA  G AGA GGAA         ccuccu       ucagcuu g gacg  c
ccg       C   -  -A G   U    aaaguacau      cgcauag       - -    ac 

Annotation confidence Not enough data

Genome context

Contig18997: 11350-11470 [+]

Mature oan-miR-1348

• Accession: MIMAT0006933
• Description: Ornithorhynchus anatinus oan-miR-1348 mature miRNA
• Sequence: 95 - AAGGUAGAGGAACAGGCCCUG - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004