miRBase entry: oan-mir-1422l

Stem-loop oan-mir-1422l


Accession
MI0006746
Description
Ornithorhynchus anatinus oan-mir-1422l precursor miRNA


Sequence

197 reads, 191.0 reads per million, 2 experiments
gugaacaucgaggcucgggUUUCAUUCAAGCCGUCUUUUCUuccuauugguaauaagAAAAUUCUGACUUGAUUGAUUCCcgagucagaugauauacac
(((..((((..((((((((..(((.((((((.(..(((((((((....))....)))))))..).).))))).)))..)))))))).))))...)))..

Structure
--   -aa    ga        UU   U     - C UC       ----  u 
  gug   cauc  ggcucggg  UCA UCAAG C G  UUUUCUu    cc a
  |||   ||||  ||||||||  ||| ||||| | |  |||||||    ||  
  cau   guag  cugagcCC  AGU AGUUC G C  AAAAgaa    gg u
ca   aua    -a        UU   U     A U UU       uaau  u 


Annotation confidence High
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Genome context
X1: 94754421-94754519 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from oan-mir-1422l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422l-5p

Accession MIMAT0006939
Description Ornithorhynchus anatinus oan-miR-1422l-5p mature miRNA
Sequence 20 - UUUCAUUCAAGCCGUCUUUUCU - 41
Evidence experimental
Illumina [1]

Mature oan-miR-1422l-3p

Accession MIMAT0061402
Description Ornithorhynchus anatinus oan-miR-1422l-3p mature miRNA
Sequence 58 - AAAAUUCUGACUUGAUUGAUUCC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004