Stem-loop oan-mir-1350

Accession

MI0006747

Description

Ornithorhynchus anatinus oan-mir-1350 precursor miRNA

Sequence

153 reads, 4 reads per million, 5 experiments

agguggcaaugggcaguauguuuccUGUCAACUGGGUCUCUCCUAGAuaggggaagccacucccagcucagaagggccuucgguuugucaucgggagacacgcccggccccu
(((.(((..(((((....(((((((((..((((((((.((((((....)))))).))).......((((....))))...)))))......))))))))).)))))))))))

Structure

   u   aa     agua         ----UC     ----------------------   C      A 
agg ggc  ugggc    uguuuccUG      AACUG                      GGU UCUCCU G
||| |||  |||||    |||||||||      |||||                      ||| ||||||  
ucc ccg  gcccg    acagagggc      uuggc                      ccg agggga A
   -   --     ---c         uacugu     uuccgggaagacucgacccuca   a      u 

Annotation confidence Not enough data

Genome context

Contig191148: 185-296 [+]

Mature oan-miR-1350

• Accession: MIMAT0006940
• Description: Ornithorhynchus anatinus oan-miR-1350 mature miRNA
• Sequence: 26 - UGUCAACUGGGUCUCUCCUAGA - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004