Stem-loop oan-mir-1351

Accession

MI0006749

Description

Ornithorhynchus anatinus oan-mir-1351 precursor miRNA

Sequence

113 reads, 3 reads per million, 4 experiments

gggccaaaccgcgguccuccugcugggcCCGAGCCCCAGCCAUGUCCGAGUcucguguaucgaguuggcUUGGCUUUGGCUGGGGCGGGUccccuuuggagguggccc
((((((.........(((((....((((((..((((((((((...((((((((((.....))))...))))))...)))))))))))))))).....)))))))))))

Structure

      aaccgcggu     -ugcu      GA          UGU      ---    u 
gggcca         ccucc     gggcCC  GCCCCAGCCA   CCGAGU   cucg g
||||||         |||||     ||||||  ||||||||||   ||||||   |||| u
cccggu         ggagg     ccUGGG  CGGGGUCGGU   GGUUcg   gagc a
      ---------     uuucc      --          UUC      guu    u 

Annotation confidence Not enough data

Genome context

Contig19877: 5135-5242 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-1351

Mature oan-miR-1351-5p

• Accession: MIMAT0006943
• Description: Ornithorhynchus anatinus oan-miR-1351-5p mature miRNA
• Sequence: 29 - CCGAGCCCCAGCCAUGUCCGAGU - 51
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-1351-3p

• Accession: MIMAT0026756
• Description: Ornithorhynchus anatinus oan-miR-1351-3p mature miRNA
• Sequence: 70 - UUGGCUUUGGCUGGGGCGGGU - 90
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45