Stem-loop oan-mir-24-1

Accession

MI0006757

Description

Ornithorhynchus anatinus oan-mir-24-1 precursor miRNA

Sequence

149238 reads, 2342 reads per million, 5 experiments

ggacugacccuccagUGCCUACUGAGCUGAUAUCAguucucguugacccacUGGCUCAGUUCAGCAGGAACAGgagugcggccc
((.(((.(.((((.((.(((.(((((((((..(((((((.....))...))))).))))))))).))).)).)))).)))))).

Structure

-  a   a c    a  G   A         UA     ---  u 
 gg cug c cucc gU CCU CUGAGCUGA  UCAgu   uc c
 || ||| | |||| || ||| |||||||||  |||||   || g
 cc ggc g gagG CA GGA GACUUGACU  GGUca   ag u
c  -   - u    A  A   C         -C     ccc  u 

Annotation confidence High

Genome context

Contig22293: 5770-5853 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-24-1

Mature oan-miR-24-1-5p

• Accession: MIMAT0006954
• Description: Ornithorhynchus anatinus oan-miR-24-1-5p mature miRNA
• Sequence: 16 - UGCCUACUGAGCUGAUAUCA - 35
• Evidence: experimental ; Illumina [1]

Mature oan-miR-24-3p

• Accession: MIMAT0006955
• Description: Ornithorhynchus anatinus oan-miR-24-3p mature miRNA
• Sequence: 52 - UGGCUCAGUUCAGCAGGAACAG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004