Stem-loop oan-mir-27b

Accession

MI0006758

Description

Ornithorhynchus anatinus oan-mir-27b precursor miRNA

Literature search

1 open access papers mention oan-mir-27b
(1 sentences)

Sequence

108506 reads, 1953 reads per million, 5 experiments

gccgucucucugucucucugucgcggcgcAGAGCUUAGCUGAUUGGUGAACagugauugcuggacucuuugUUCACAGUGGCUAAGUUCUGCgcccgcagagaaggggacggacggc
(((((((.(((.(.((((((.((.((((((((((((((((.((((.(((((((.((((....)).)).))))))))))))))))))))))))))))))))))).).))).)))))))

Structure

       c   g c      u  c                G    G       u  -  g 
gccgucu ucu u ucucug cg ggcgcAGAGCUUAGCU AUUG UGAACag ga uu c
||||||| ||| | |||||| || |||||||||||||||| |||| ||||||| || ||  
cggcagg agg g agagac gc ccgCGUCUUGAAUCGG UGAC ACUUguu cu ag u
       c   g a      -  -                -    -       u  c  g 

Annotation confidence High

Genome context

Contig22293: 6340-6456 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oan-mir-27b

Mature oan-miR-27b-5p

• Accession: MIMAT0006956
• Description: Ornithorhynchus anatinus oan-miR-27b-5p mature miRNA
• Sequence: 30 - AGAGCUUAGCUGAUUGGUGAAC - 51
• Evidence: experimental ; Illumina [1]

Mature oan-miR-27b-3p

• Accession: MIMAT0006957
• Description: Ornithorhynchus anatinus oan-miR-27b-3p mature miRNA
• Sequence: 72 - UUCACAGUGGCUAAGUUCUGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004